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For hg38
BigWig
Peak-call (q < 1E-05)
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Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
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For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
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For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: CRTC1
wikigenes
PDBj
CellType: iPSC derived neural cells
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX6780874
GSM4054664: iCell ChIP-CRTC1 NT KCl-0hr B4 1; Homo sapiens; ChIP-Seq
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
CRTC1
Cell type
Cell type Class
Pluripotent stem cell
Cell type
iPSC derived neural cells
NA
NA
Attributes by original data submitter
Sample
source_name
CRTC1 ChIP-Seq, iCell neurons, unstimulated, biorep 4, tech rep 1
tissue
cultured human iPSC-derived neurons at ~DIV16
time post-kcl stimulation
unstimulated
biological replicate
4
technical replicate
1
chip epitope
CRTC1
Sequenced DNA Library
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
library_construction_protocol
nuclear isolation from homogenized cultures Nugen Ovation Ultralow Library System V1 using 2ng of starting DNA and performing 18 cycles of amplification
Sequencing Platform
instrument_model
NextSeq 500
Where can I get the processing logs?
Read processing pipeline
log
hg38
Number of total reads
55257883
Reads aligned (%)
90.1
Duplicates removed (%)
36.1
Number of peaks
1401 (qval < 1E-05)
hg19
Number of total reads
55257883
Reads aligned (%)
89.5
Duplicates removed (%)
37.8
Number of peaks
1074 (qval < 1E-05)
Base call quality data from
DBCLS SRA